Cell Maps Utilities

Contains utilities needed by various tools in the cell maps toolkit.

• Free software: MIT license

• Source code: https://github.com/idekerlab/cellmaps_utils

Contents:

• Installation
  • Stable release
  • From sources
• Usage
  • In a project (RO-Crate)
  • Cell Maps for AI Data Release
  • Hierarchical networks support (CX2/ HCX)
• Outputs
  • RO-Crate directory summary table
  • Perturbation/CRISPR
  • Affinity Purification Mass Spectrometry (AP-MS)
  • Size Exclusion Chromatography with Mass Spectrometry (SEC-MS)
  • Immunofluorescent Image (IFImage)
• Reference
  • cellmaps_utils package
• Developer Topics
  • Contributing
  • Development Process
  • Creating a new release
  • Expected configuration for .pypirc file
  • Integration testing
  • Versioning Scheme
• Credits
  • Developers
  • Contributors
• History
  • 0.8.0 (2025-04-23)
  • 0.7.0 (2025-03-05)
  • 0.6.0 (2025-02-05)
  • 0.5.0 (2024-09-05)
  • 0.4.0 (2024-07-02)
  • 0.3.0 (2024-04-15)
  • 0.2.0 (2024-02-20)
  • 0.1.0 (2024-01-01)

Indices and tables

• Index

• Module Index

• Search Page